############# DOI ###################
  
Title           ="Complete scan at 19.57 um of the brain of the body donor S-20-29"
Abstract        ="Complete scan at 19.57 um voxel size performed by HiP-CT on the beamline BM18 of the brain from the body donor S-20-29 using quarter-acquisition protocol."
Users           ="C. L. Walsh, J. Brunet, C. Berruyer, E. O'Leary, S. Rahmani, A. Bellier, Y. Boukortt, A. de Maria, M. Bodin, K. Engel, K. Dollman, J. Jacobs, C. Werlein, D. Jonigk, M. Ackermann, P. Tafforeau, P. D. Lee"


############ proposal ###############

proposalTitle   ="Bridging the gap between cellular and whole body imaging using Hierarchical Phase-Contrast Tomography: HiP-CT"
proposalNumber  ="md1290"
proposers       ="Peter D. Lee, Paul Tafforeau, Claire Walsh"
experimentType  ="tomography"
technique       ="Hierachical Phase-Contrast Tomography (HiP-CT)"
beamlineName    ="BM18"
instrumentName  ="MRtomo"


############ patient ################

PatientInstitue ="Hannover Medical School"
PatientNumber   ="S-20-29"
PatientAge      ="80 years"
PatientSex      ="M"
PatientWeight   ="U.N. kg"
PatientSize     ="U.N. cm"
PatientMedInfo  ="Type 2 diabetes mellitus, Kidney failure, arterial hypertension, Z.n. Spondylodesis LWK 2 and sacral vertebra 2, SARS-CoV2 infection, symptoms of memory loss and predementia."


########### sample ################

SampleName      ="S-20-29_brain"
Organ           ="brain"
SampleInfo      ="complete brain from the Hannover Medical School"
SamplePrep      ="formalin fixed, progressive transfer to ethanol 70%. Vacuum degassing at each transfer to new ethanol bath, mounted with agar crushed gel at 70% ethanol"

########### scan parameters ###########

StartTime       ="21/07/2022"
SRCurrent       ="U.N. mA"
IDNames         ="BM18"
ScanRadix       ="19.57um_S-20-29_brain"
XStep           ="N.A."
XStages         ="1"
YStep           ="N.A."
YStages         ="1"
ZStep           ="U.N."
ZStages         ="U.N."
Projections     ="9900"
RefN            ="3"
DarkN           ="40"
RefOn           ="U.N."
ScanningMode    ="Continuous"
ExposureTime    ="0.02 s"
AccExposureTime ="0.08 s"
AccFramesCount  ="4"
PixelSize       ="19.57 um"
PropDistance    ="15000 mm"
Filters         ="Sapphire 5mm block, SiO2 15mm block"
Det_Avg_Energy  ="72 keV"
ScanGeometry    ="quarter-acquisition"
ScanRange       ="360 deg"
SensorName      ="PCO edge 4.2 CLHS"
SensorMode      ="U.N."
SensorPixelSize ="6.5 um"
Magnification   ="0.33"
XPixelNum       ="2048"
YPixelNum       ="512"
OpticsType      ="Dzoom"
Scintillator    ="LuAG:Ce 2000um"
SurfDoseRate    ="U.N. Gy/s"
VoiDoseRate     ="U.N. Gy/s"
VoiIntegDose    ="U.N. kGy"
ScanTime        ="U.N. min"
SeriesTime      ="0.0 h"


######### processing ############

RefApproach     ="reference jar with 70% ethanol, single reference per scan type"
VolumeX         ="7621"
VolumeY         ="7621"
VolumeZ         ="9080"
32to16BitsMin   ="-0.04"
32to16BitsMax   ="0.18"
Jp2ComprRatio   ="10"